LOCUS LITMUS_U 2715 bp DNA circular 07-DEC-2007 DEFINITION Cloning vector LITMUS_U, complete sequence. ACCESSION VERSION KEYWORDS . SOURCE Cloning vector LITMUS_U ORGANISM Cloning vector LITMUS_U other sequences; artificial sequences; vectors. REFERENCE 1 (bases 1 to 2715) AUTHORS Evans,P.D., Cook,S.N., Riggs,P.D. and Noren,C.J. TITLE LITMUS: multipurpose cloning vectors with a novel system for bidirectional in vitro transcription JOURNAL Biotechniques 19 (1), 130-135 (1995) REFERENCE 2 (bases 1 to 2715) AUTHORS Tzertzinis,G. TITLE Direct Submission JOURNAL Submitted (07-DEC-2007) Research Department, New England Biolabs, 240 County Road, Ipswich, MA 01938, USA COMMENT The plasmid is supplied in a linearized form 2715 bp in length (same length as the circular form, linearized after nt 2480), including two flanking, noncomplementary 8-base 3' overhangs at the intended cloning site. This form consists of bases (2481..2715,1..2480) where 2473..2480 and 2481..2488 are single stranded. Shown here in circular form for easy alignment with other LITMUS vectors. FEATURES Location/Qualifiers source 1..2715 /organism="Cloning vector LITMUS_U" /mol_type="other DNA" gene 143..1003 /gene="bla" CDS 143..1003 /gene="bla" /note="ampR (confers resistance to ampicillin)" /codon_start=1 /product="beta-lactamase" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY IELDLNSGKILESFRPEERSPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL DRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA EIGASLIKHW" sig_peptide 143..211 /gene="bla" /note="Required for secretion to the periplasm; cleaved off to form the mature beta-lactamase protein." rep_origin complement(1045..1554) /note="M13 origin of replication (+ -)" rep_origin 1665..2253 /note="pMB1 origin of replication (clockwise) (RNAII -35 to RNA/DNA switch point)" gene 2424..2687 CDS 2424..2687 /gene="lacZ" /codon_start=1 /product="beta-galactosidase alpha fragment" /translation="MTMITPSYVIRLTIGLRRHTFPQPYSESYYGLAVVLQRRDWENP GVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRFAW" promoter 2449..2466 /note="T7 promoter (transcript start 2466 clockwise)" misc_feature 2473..2588 /note="USER cloning site; BbvCI sites at 2468 and 2487; bottom strand nt 2473-2480 and top strand nt 2481-2488 deleted by Nb.BbvCIB digestion in the supplied linear form, linearized after nt 2480" promoter complement(2495..2512) /note="T7 promoter (transcript start 2495 counter-clockwise)" BASE COUNT 717 a 649 c 682 g 667 t ORIGIN 1 gttaactacg tcaggtggca cttttcgggg aaatgtgcgc ggaaccccta tttgtttatt 61 tttctaaata cattcaaata tgtatccgct catgagacaa taaccctgat aaatgcttca 121 ataatattga aaaaggaaga gtatgagtat tcaacatttc cgtgtcgccc ttattccctt 181 ttttgcggca ttttgccttc ctgtttttgc tcacccagaa acgctggtga aagtaaaaga 241 tgctgaagat cagttgggtg cacgagtggg ttacatcgaa ctggatctca acagcggtaa 301 gatccttgag agttttcgcc ccgaagaacg ttctccaatg atgagcactt ttaaagttct 361 gctatgtggc gcggtattat cccgtgttga cgccgggcaa gagcaactcg gtcgccgcat 421 acactattct cagaatgact tggttgagta ctcaccagtc acagaaaagc atcttacgga 481 tggcatgaca gtaagagaat tatgcagtgc tgccataacc atgagtgata acactgcggc 541 caacttactt ctgacaacga tcggaggacc gaaggagcta accgcttttt tgcacaacat 601 gggggatcat gtaactcgcc ttgatcgttg ggaaccggag ctgaatgaag ccataccaaa 661 cgacgagcgt gacaccacga tgcctgtagc aatggcaaca acgttgcgca aactattaac 721 tggcgaacta cttactctag cttcccggca acaattaata gactggatgg aggcggataa 781 agttgcagga ccacttctgc gctcggccct tccggctggc tggtttattg ctgataaatc 841 tggagccggt gagcgtgggt ctcgcggtat cattgcagca ctggggccag atggtaagcc 901 ctcccgtatc gtagttatct acacgacggg gagtcaggca actatggatg aacgaaatag 961 acagatcgct gagataggtg cctcactgat taagcattgg taactgtcag accaagttta 1021 ctcatatata ctttagattg atttaccccg gttgataatc agaaaagccc caaaaacagg 1081 aagattgtat aagcaaatat ttaaattgta aacgttaata ttttgttaaa attcgcgtta 1141 aatttttgtt aaatcagctc attttttaac caataggccg aaatcggcaa aatcccttat 1201 aaatcaaaag aatagcccga gatagggttg agtgttgttc cagtttggaa caagagtcca 1261 ctattaaaga acgtggactc caacgtcaaa gggcgaaaaa ccgtctatca gggcgatggc 1321 ccactacgtg aaccatcacc caaatcaagt tttttggggt cgaggtgccg taaagcacta 1381 aatcggaacc ctaaagggag cccccgattt agagcttgac ggggaaagcg aacgtggcga 1441 gaaaggaagg gaagaaagcg aaaggagcgg gcgctagggc gctggcaagt gtagcggtca 1501 cgctgcgcgt aaccaccaca cccgccgcgc ttaatgcgcc gctacagggc gcgtaaaagg 1561 atctaggtga agatcctttt tgataatctc atgaccaaaa tcccttaacg tgagttttcg 1621 ttccactgag cgtcagaccc cgtagaaaag atcaaaggat cttcttgaga tccttttttt 1681 ctgcgcgtaa tctgctgctt gcaaacaaaa aaaccaccgc taccagcggt ggtttgtttg 1741 ccggatcaag agctaccaac tctttttccg aaggtaactg gcttcagcag agcgcagata 1801 ccaaatactg ttcttctagt gtagccgtag ttaggccacc acttcaagaa ctctgtagca 1861 ccgcctacat acctcgctct gctaatcctg ttaccagtgg ctgctgccag tggcgataag 1921 tcgtgtctta ccgggttgga ctcaagacga tagttaccgg ataaggcgca gcggtcgggc 1981 tgaacggggg gttcgtgcac acagcccagc ttggagcgaa cgacctacac cgaactgaga 2041 tacctacagc gtgagctatg agaaagcgcc acgcttcccg aagggagaaa ggcggacagg 2101 tatccggtaa gcggcagggt cggaacagga gagcgcacga gggagcttcc agggggaaac 2161 gcctggtatc tttatagtcc tgtcgggttt cgccacctct gacttgagcg tcgatttttg 2221 tgatgctcgt caggggggcg gagcctatgg aaaaacgcca gcaacgcggc ctttttacgg 2281 ttcctggcct tttgctggcc ttttgctcac atgtaatgtg agttagctca ctcattaggc 2341 accccaggct ttacacttta tgcttccggc tcgtatgttg tgtggaattg tgagcggata 2401 acaatttcac acaggaaaca gctatgacca tgattacgcc aagctacgta atacgactca 2461 ctatagggct gaggagacat actttccctc agccctatag tgagtcgtat tacggactgg 2521 ccgtcgtttt acaacgtcgt gactgggaaa accctggcgt tacccaactt aatcgccttg 2581 cagcacatcc ccctttcgcc agctggcgta atagcgaaga ggcccgcacc gatcgccctt 2641 cccaacagtt gcgcagcctg aatggcgaat ggcgcttcgc ttggtaataa agcccgcttc 2701 ggcgggcttt ttttt //